NEWS

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readMzXmlData 2.8.3 (2023-08-19)

• Remove package version from man page.
• Fix argument name in '?revfregexpr'.

readMzXmlData 2.8.2 (2022-11-08)

• Fix duplicated manual to avoid NOTE on CRAN.
• readMzXmlData now depends on R 4.2.0.
• Update URLs to https where possible.

readMzXmlData 2.8.1 (2015-09-16)

• Import utils::tail.

readMzXmlData 2.8 (2014-09-28)

• mqReadMzXml is removed. Use MALDIquantForeign::importMzXml instead.

readMzXmlData 2.7 (2013-07-03)

• Replace all paste(..., sep="") calls by paste0; now readMzXmlData depends on R >= 2.15.
• For empty scans mass and intensity are double() instead of list().

readMzXmlData 2.6 (2013-04-03)

• Remove LICENSE file.
• DESCRIPTION: move base64enc, digest and XML to "Imports".
• mqReadMzXml is marked as deprecated. Use MALDIquantForeign::importMzXml instead.

readMzXmlData 2.5 (2012-12-09)

• Replace .base64decode by base64enc::base64decode.
• Replace .fregexpr by .revfregexpr (start search for sha1 sum from the end of the file).

readMzXmlData 2.4 (2012-09-13)

• Fix error message if a required attribute is missing.
• Attribute "scanCount" is now optional (as intended in mzXML specification).
• Assume msLevel==1 if attribute "msLevel" is missing.
• Update DESCRIPTION file to use Authors@R and depends on R>=2.14 now.
• Roxygenize package.

readMzXmlData 2.3 (2012-05-06)

• mqReadMzXml always returns a list of MassSpectrum objects (for a single MassSpectrum object it returns a list, too).

readMzXmlData 2.2.1 (2012-03-09)

• Keep filename if removeMetaData==TRUE.
• Replace some warning()'s by stop()'s.

readMzXmlData 2.2 (2012-01-31)

• Add compression support (compressionType="zlib").

readMzXmlData 2.1.1 (2012-01-28)

• Remove import directives in NAMESPACE (Otherwise installation fails on R<2.14 because bitops has no NAMESPACE file.).

readMzXmlData 2.1 (2012-01-26)

• Change NAMESPACE file.
• Hide .base64decode by NAMESPACE.
• Add compressionType and compressedLen attributes (but don't handle them due lack of test files).

readMzXmlData 2.0.1 (2012-01-12)

• Fix dataProcessing parsing.

readMzXmlData 2.0 (2011-10-04)

• Complete rewrite of mzXML parser (using xmlEventParse; no wrapper of caMassClass' read.mzXML anymore).

readMzXmlData 1.3.1 (2011-09-24)

• Fix import of mzXML 3.x files. (attribute "pairOrder" (mzXML 2.2) is called "contentType" in 3.x).

readMzXmlData 1.3 (2011-05-29)

• Add mqReadMzXml.

readMzXmlData 1.2 (2011-03-21)

• Unhide .read.mzXML and .base64decode by NAMESPACE.
• Surround package names by double quotes.

readMzXmlData 1.1 (2011-02-22)

• Prepend dot to function names of read.mzXML and base64decode to avoid conflicts with caMassClass.
• Hide .read.mzXML and .base64decode by NAMESPACE.

readMzXmlData 1.0

• First public release.
• Reads mass spectrometry data from mzXML files.