Changes in version 1.9.3 (2024-10-02) o Fix: parse "V1.0TOF2CalibrationConstants" stored in scientific notation. Thanks to Daniel Vogel for reporting this problem. Changes in version 1.9.2 (2024-01-22) o Fix: lost braces in extractHPCConstants.Rd, readBrukerFlexDir.Rd, and readBrukerFlexFile.Rd. o Fix: fidFile argument in usage section in readAcquFile.Rd. Changes in version 1.9.1 (2023-04-01) o Read acqus file if acqu file is missing. Suggested by Daniel Vogel (@herr-vogel). Changes in version 1.9.0 (2022-06-19) o Add basic support for cubic calibration as encoded in "V1.0TOF2CalibrationConstants" (fixes https://github.com/sgibb/readBrukerFlexData/issues/3). Contributed by Samuel Granjeaud (@SamGG) and Alan Race (@AlanRace). Changes in version 1.8.5 (2017-04-22) o Don't errorously convert tof to mass if "V1.0CTOF2CalibrationConstants" was used and throw a warning. Changes in version 1.8.4 o Add plain text instrument type in metaData. Changes in version 1.8.3 (2016-11-30) o Fix broken link to IEEE 754 standard in double2singlePrecision manual page. o Some acqu files report a greater number of tof/mass values than the number of intensity values in the fid files. Now the last tof/mass values are removed to keep the number of tof/mass/intensity equal and a warning is thrown. Thanks to Frederic Foucault for reporting this problem. Changes in version 1.8.2 (2014-12-16) o Fix sampleName for directory structures generated by old versions of the Bruker FlexControl software. Thanks to Christoph Lange for reporting this problem. Changes in version 1.8.1 (2014-11-05) o Fix: Reading a file that has no values for "HPClUse" or "Lift1"/"Lift2" failed. Thanks to Christoph Lange for reporting this problem. Changes in version 1.8 (2014-09-27) o mqReadBrukerFlex is removed. Use MALDIquantForeign::importBrukerFlex instead. Changes in version 1.7 (2013-08-10) o Always return intensity values as "double". o Now all negative intensity values are replaced by zero. This could be disabled by setting the new argument "keepNegativeIntensities" to "TRUE" [not recommended]. o Replace all paste(..., sep="") by paste0; now readBrukerFlexData depends on R >= 2.15. Changes in version 1.6.3 (2013-04-28) o Fetch spectrum position from IMS data files. Changes in version 1.6.2 (2013-03-28) o Fix: empty digityzerType, spectrumType, acquisitionMode throw an error. Changes in version 1.6.1 (2013-03-28) o metaData: update digityzerType, spectrumType, acquisitionMode. o Remove LICENSE file. Changes in version 1.6 (2012-12-12) o mqReadBrukerFlex is marked as deprecated. Use MALDIquantForeign::importBrukerFlex instead. o Fix description. Changes in version 1.5 (2012-10-22) o readBrukerFlexFile doesn't store original mass in metaData$backup anymore if HPC was detected (to get original mass set argument "useHpc" to FALSE). Changes in version 1.4 (2012-09-11) o Update DESCRIPTION file to use Authors@R and depends on R>=2.14 now. o Add warning if LIFT mode was used. o Split into multiple files. o Roxygenize package. Changes in version 1.3 (2012-05-06) o mqReadBrukerFlex always returns a list of MassSpectrum objects (for a single MassSpectrum object it returns a list, too). o Eliminate 4 comments limit. Changes in version 1.2.7 (2012-03-09) o Keep filename if removeMetaData==TRUE. Changes in version 1.2.6 o Accept comma as decimal mark for timeDelta. Changes in version 1.2.5 (2012-03-07) o Fix directory separator handling for sampleName on windows. Changes in version 1.2.4 (2012-02-03) o Accept comma as decimal mark in acqu files. o Replace some warning()'s by stop()'s. Changes in version 1.2.3 (2012-01-29) o Fetch endianness of fid file from acqu file. o Change NAMESPACE. o Hide .hpc by NAMESPACE. Changes in version 1.2.2 (2012-01-18) o Fix warning message "empty spectrum". Changes in version 1.2.1 (2011-12-19) o Set default value filterZeroIntensities=FALSE. Changes in version 1.2 (2011-12-19) o Add filterZeroIntensities parameter to readBrukerFlexFile. o Fix bug which produced NaN's if ML3==0 (reported and patched by Julien Textoris). Changes in version 1.1 (2011-05-29) o Add mqReadBrukerFlex. o Depends on R>=2.10. Changes in version 1.0.5 (2011-03-21) o Surround package names by double quotes. Changes in version 1.0.4 (2011-02-21) o Replace library reference in cpSpecHpcMzXml-data to readMzXmlData. o Replace all paste(directory, file, sep="/") by file.path(directory, file). Changes in version 1.0.3 (2011-02-17) o Fix directory separator in an example. Changes in version 1.0.2 o Fix directory separator in regular expression. Changes in version 1.0.1 (2011-02-16) o Fix example code. o Minor typos in documentation corrected. Changes in version 1.0 (2011-02-15) o First public release. o Reads acqu and fid files generated by mass spectrometer of Bruker Daltonics' *flex series.