NEWS

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readBrukerFlexData 1.9.3 (2024-10-02)

• Fix: parse "V1.0TOF2CalibrationConstants" stored in scientific notation. Thanks to Daniel Vogel <[email protected]> for reporting this problem.

readBrukerFlexData 1.9.2 (2024-01-22)

• Fix: lost braces in extractHPCConstants.Rd, readBrukerFlexDir.Rd, and readBrukerFlexFile.Rd.
• Fix: fidFile argument in usage section in readAcquFile.Rd.

readBrukerFlexData 1.9.1 (2023-04-01)

• Read acqus file if acqu file is missing. Suggested by Daniel Vogel (@herr-vogel).

readBrukerFlexData 1.9.0 (2022-06-19)

• Add basic support for cubic calibration as encoded in "V1.0TOF2CalibrationConstants" (fixes https://github.com/sgibb/readBrukerFlexData/issues/3). Contributed by Samuel Granjeaud (@SamGG) and Alan Race (@AlanRace).

readBrukerFlexData 1.8.5 (2017-04-22)

• Don't errorously convert tof to mass if "V1.0CTOF2CalibrationConstants" was used and throw a warning.

readBrukerFlexData 1.8.4

• Add plain text instrument type in metaData.

readBrukerFlexData 1.8.3 (2016-11-30)

• Fix broken link to IEEE 754 standard in double2singlePrecision manual page.
• Some acqu files report a greater number of tof/mass values than the number of intensity values in the fid files. Now the last tof/mass values are removed to keep the number of tof/mass/intensity equal and a warning is thrown. Thanks to Frederic Foucault <[email protected]> for reporting this problem.

readBrukerFlexData 1.8.2 (2014-12-16)

• Fix sampleName for directory structures generated by old versions of the Bruker FlexControl software. Thanks to Christoph Lange <[email protected]> for reporting this problem.

readBrukerFlexData 1.8.1 (2014-11-05)

• Fix: Reading a file that has no values for "HPClUse" or "Lift1"/"Lift2" failed. Thanks to Christoph Lange <[email protected]> for reporting this problem.

readBrukerFlexData 1.8 (2014-09-27)

• mqReadBrukerFlex is removed. Use MALDIquantForeign::importBrukerFlex instead.

readBrukerFlexData 1.7 (2013-08-10)

• Always return intensity values as "double".
• Now all negative intensity values are replaced by zero. This could be disabled by setting the new argument "keepNegativeIntensities" to "TRUE" [not recommended].
• Replace all paste(..., sep="") by paste0; now readBrukerFlexData depends on R >= 2.15.

readBrukerFlexData 1.6.3 (2013-04-28)

• Fetch spectrum position from IMS data files.

readBrukerFlexData 1.6.2 (2013-03-28)

• Fix: empty digityzerType, spectrumType, acquisitionMode throw an error.

readBrukerFlexData 1.6.1 (2013-03-28)

• metaData: update digityzerType, spectrumType, acquisitionMode.
• Remove LICENSE file.

readBrukerFlexData 1.6 (2012-12-12)

• mqReadBrukerFlex is marked as deprecated. Use MALDIquantForeign::importBrukerFlex instead.
• Fix description.

readBrukerFlexData 1.5 (2012-10-22)

• readBrukerFlexFile doesn't store original mass in metaData$backup anymore if HPC was detected (to get original mass set argument "useHpc" to FALSE).

readBrukerFlexData 1.4 (2012-09-11)

• Update DESCRIPTION file to use Authors@R and depends on R>=2.14 now.
• Add warning if LIFT mode was used.
• Split into multiple files.
• Roxygenize package.

readBrukerFlexData 1.3 (2012-05-06)

• mqReadBrukerFlex always returns a list of MassSpectrum objects (for a single MassSpectrum object it returns a list, too).
• Eliminate 4 comments limit.

readBrukerFlexData 1.2.7 (2012-03-09)

• Keep filename if removeMetaData==TRUE.

readBrukerFlexData 1.2.6

• Accept comma as decimal mark for timeDelta.

readBrukerFlexData 1.2.5 (2012-03-07)

• Fix directory separator handling for sampleName on windows.

readBrukerFlexData 1.2.4 (2012-02-03)

• Accept comma as decimal mark in acqu files.
• Replace some warning()'s by stop()'s.

readBrukerFlexData 1.2.3 (2012-01-29)

• Fetch endianness of fid file from acqu file.
• Change NAMESPACE.
• Hide .hpc by NAMESPACE.

readBrukerFlexData 1.2.2 (2012-01-18)

• Fix warning message "empty spectrum".

readBrukerFlexData 1.2.1 (2011-12-19)

• Set default value filterZeroIntensities=FALSE.

readBrukerFlexData 1.2 (2011-12-19)

• Add filterZeroIntensities parameter to readBrukerFlexFile.
• Fix bug which produced NaN's if ML3==0 (reported and patched by Julien Textoris).

readBrukerFlexData 1.1 (2011-05-29)

• Add mqReadBrukerFlex.
• Depends on R>=2.10.

readBrukerFlexData 1.0.5 (2011-03-21)

• Surround package names by double quotes.

readBrukerFlexData 1.0.4 (2011-02-21)

• Replace library reference in cpSpecHpcMzXml-data to readMzXmlData.
• Replace all paste(directory, file, sep="/") by file.path(directory, file).

readBrukerFlexData 1.0.3 (2011-02-17)

• Fix directory separator in an example.

readBrukerFlexData 1.0.2

• Fix directory separator in regular expression.

readBrukerFlexData 1.0.1 (2011-02-16)

• Fix example code.
• Minor typos in documentation corrected.

readBrukerFlexData 1.0 (2011-02-15)

• First public release.
• Reads acqu and fid files generated by mass spectrometer of Bruker Daltonics' *flex series.